Here's a geographical surprise: no river flows through the city of San Francisco. The Sacramento and San Joaquin Rivers—California's two largest—converge in the Sacramento-San Joaquin Delta, flow into San Francisco Bay, and define the bay's northern and eastern boundaries. But the city itself? It sits on a peninsula northwest of the bay, separated from the mainland by the Golden Gate strait.
San Francisco occupies the northern tip of the San Francisco Peninsula—a 50-km ridge separating the Pacific Ocean (west) from San Francisco Bay (east). Its only natural freshwater features are:
People conflate San Francisco Bay with the city of San Francisco. The bay is a drowned river valley system (estuaries of Sacramento/San Joaquin). The city is a peninsula city. The distinction matters: Oakland, Berkeley, Richmond, and Vallejo sit on the bay's eastern shore—different cities, different counties, same estuary.
San Francisco's water comes from the Hetch Hetchy Reservoir (Tuolumne River, Yosemite)—267 km via aqueduct. The city owns its watershed, a rarity among US metros. Local groundwater is minimal; desalination is debated but not implemented.
So when someone says "the river running through San Francisco," the accurate answer is: there isn't one. The city's water relationship is imported supply, bay frontage, and ocean exposure—a maritime identity, not a riparian one.